I recently tried connecting some Western Digital Blue 3D NAND drives to a GA-990XA-UD3 motherboard, and experienced an issue I've never encountered before.
The drives (WDS250G2B0A) are detected by the BIOS, but in Windows they just don't show up at all. Not in Device Manager or Disk Management, and not in RAIDXpert.
Connecting or hotplugging any other drive works fine; the drive shows up after a few seconds. And here's the really interesting part: Connecting the WD drives to the exact same motherboard port(s) via a generic SATA 3.0 port multiplier also works.
I've tried disabling SATA 3.0 support in the BIOS, but it made no difference. Connecting or disconnecting the WD drives does not cause any entries to appear in the Windows Event Logs. It's like nothing is detected by the driver.
Since the drives do show up in the BIOS as well as in the firmware RAID Setup Utility, I primarily suspect the RAID driver, perhaps a timing issue of some sorts. Can the driver be tweaked by means of registry settings or something similar?